The AstroStat Slog » SPS http://hea-www.harvard.edu/AstroStat/slog Weaving together Astronomy+Statistics+Computer Science+Engineering+Intrumentation, far beyond the growing borders Fri, 09 Sep 2011 17:05:33 +0000 en-US hourly 1 http://wordpress.org/?v=3.4 [SPS] Testing Completeness http://hea-www.harvard.edu/AstroStat/slog/2008/sps-completeness/ http://hea-www.harvard.edu/AstroStat/slog/2008/sps-completeness/#comments Wed, 19 Nov 2008 05:34:59 +0000 hlee http://hea-www.harvard.edu/AstroStat/slog/?p=353 There will be a special session at the 213th AAS meeting on meaning from surveys and population studies (SPS). Until then, it might be useful to pull out some interesting and relevant papers and questions/challenges as a preliminary to the meeting. I will not list astronomical catalogs and surveys only, which are literally countless these days but will bring out some if they change the way how science is performed with a description of the catalog (the best example would be SDSS, Sloan Digital Sky Survey, to my knowledge).

The main focus of the series of postings (I’m not sure how many there will be. There are chances that [SPS] series might be terminated after this season) is introducing some statistical challenges including managing data, opt to be spawn from astronomical surveys and population studies. My paper selection criterion is based on the group discussions from the SPS working group during SAMSI astrostatistics program in 2006 (group leaders were G. Babu, Director of CASt and T. Loredo).

Completeness – I. Revised, reviewed and revived by Johnston, Teodoro, and Hendry
MNRAS, 376(4), pp. 1757-176
Abstract (abridged to the first paragraph) We have extended and improved the statistical test recently developed by Rauzy for assessing the completeness in apparent magnitude of magnitude-redshift surveys. Our improved test statistic retains the robust properties – specifically independence of the spatial distribution of galaxies within a survey – of the Tc statistic introduced in Rauzy’s seminal paper, but now accounts for the presence of both a faint and bright apparent magnitude limit. We demonstrate that a failure to include a bright magnitude limit can significantly affect the performance of Rauzy’s Tc statistic. Moreover, we have also introduced a new test statistic, Tv, defined in terms of the cumulative distance distribution of galaxies within a redshift survey. These test statistics represent powerful tools for identifying and characterizing systematic errors in magnitude-redshift data.

One of the authors was an active participant of the SPS working group at SAMSI. The following three quotes pertain statistically genuine content-wise although the paper was published in MNRAS.

It is straightforward to show from this definition that the random variable η has a uniform distribution on the interval [0,1], and furthermore that η and Z are statistically independent.

If the sample is complete in apparent magnitude, for a given pair of trial magnitude limits, then Tc should be normally distributed with mean zero and variance unity. If, on the other hand, the trial faint (bright) magnitude limit is fainter (brighter) than the true limit, Tc will become systematically negative, due to the systematic departure of the $$\hat{\eta}_i$$ distribution from uniform on the interval [0,1].

If the sample is complete in apparent magnitude, for a given pair of trail magnitude limits, then Tv should be normally distributed with mean zero, and variance unity. If, on the other hand, the trail faint (bright)magnitude limit is fainter (brighter) than the true limit, in either case Tv will become systematically negative, due to the systematic departure of the $$\hat{\tau}_i$$ distribution from uniform on the interval [0,1].

Their statistics is utilized as a diagnostic tool such that the estimate of statistics becomes an indicator of completeness at a given magnitude. Otherwise, asymptotic studies could have been exercised in depth so that people who use their statistics (Tc and Tv) could obtain p-values (for hypothesis testing) and confidence intervals. The authors, however, computed the means and variances and stated that these statistics are standard normal without no rigorous proofs. On the other hand, the process of estimating Tc and Tv statistics is nonparametric so that further statistical inference such as showing that asymptotically Tc and Tv are normal, can be very challenging unless strong assumptions on (probabilistic) models and/or priors are given. Overall, these statistics are more statistically appealing to me in terms of testing completeness compared to other ratio based methods.

Testing completeness now seems not a difficult task due to these statistics, extensive survey catalogs, and better understanding of populations. However, still uncertainties in k-correction, e-correction, and extinction correction make their statistics fuzzy and difficult to interpret results. Changes in statistics due to these uncertainties are hard to be characterized. Furthermore, obtaining good (point) estimators for these correction terms still remains as almost unconquered.

In addition to testing completeness described in the above paper, regarding incompleteness, I’ve seen modeling efforts basically based on the power law, whose slope parameter is an indicator of cosmological models from x-ray astronomy. Unfortunately, incompleteness makes the slope estimation process complex and lots of efforts are found in searching/estimating a model reflecting this incompleteness in observations as a function of redshifts or magnitudes; otherwise, it is fitting a simple ordinary linear regression model with a complete data set.

I believe someday incompleteness will be stochastically modeled (parameterized to draw information and to offer good prediction) beyond testing and will offer better understanding of the visible universe (visible here is a very broad concept, not indicating something only can be seen through naked human eyes). For a while, (in)completeness has been a concept and a word of meaning to which mathematical compactness and statistical modeling has never been attached to test and to understand uncertainties.

p.s. I have been paying lots of attention on citation style; in contrast, you’ve noticed my citations are far from consistency. Two noticeable differences between citation styles of statistics and astronomy are abbreviation of journal names and inclusion of titles. Astronomers’ citation is compact, concise, and same across astronomical journals; on the contrary, statisticians’ citation is lengthy, informative (because of title), and various across statistical and applied statistics journals. MNRAS reminded me something that from a paper written by a very renowned statistician referred a paper from MNRAS but said Monograph National Royal Astronomical Society. I think now you become gracious to my citation style.

[disclaimer] I saw various population studies in astronomy from a broad wavelength range, each of which has different objectives, targets, obstacles, and study designs (even telescopes, detectors, data pipelines, and sampling schemes are different), and (in)completeness studies are designed to reflect those differences. I’m afraid that I’m only reporting a tiny fraction of all efforts related to (in)completeness. Your comments are most welcome. Also, I wish for your posts and comments regarding (in)completeness, volume/magnitude limited sample, survey studies, upper limits, missing values in survey, clustering, spatial distribution, large scale structure, etc in the near future.

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survey and design of experiments http://hea-www.harvard.edu/AstroStat/slog/2008/survey-and-design-of-experiments/ http://hea-www.harvard.edu/AstroStat/slog/2008/survey-and-design-of-experiments/#comments Wed, 01 Oct 2008 20:16:24 +0000 hlee http://hea-www.harvard.edu/AstroStat/slog/?p=894 People of experience would say very differently and wisely against what I’m going to discuss now. This post only combines two small cross sections of each branch of two trees, astronomy and statistics.

When it comes to survey, the first thing comes in my mind is the census packet although I only saw it once (an easy way to disguise my age but this is true) but the questionaire layouts are so carefully and extensively done so as to give me a strong impression. Such survey is designed prior to collecting data so that after collection, data can be analyzed according to statistical methodology suitable to the design of the survey. Strategies for response quantification is also included (yes/no for 0/1, responses in 0 to 10 scale, bracketing salaries, age groups, and such, handling missing data) for elaborated statistical analysis to avoid subjective data transformation and arbitrary outlier eliminations.

In contrast, survey in astronomy means designing a mesh, not questionaires, unable to be transcribed into statistical models. This mesh has multiple layers like telescope, detector, and source detection algorithm, and eventually produces a catalog. Designing statistical methodology is not a part of it that draws interpretable conclusion. Collecting what goes through that mesh is astronomical survey. Analyzing the catalog does not necessarily involve sophisticated statistics but often times adopts chi-sq fittings and cast aways of unpleasant/uninteresting data points.

As other conflicts in jargon, –a simplest example is Ho: I used to know it as Hubble constant but now, it is recognized first as a notation for a null hypothesissurvey has been one of them and like the measurement error, some clarification about the term, survey is expected to be given by knowledgeable astrostatisticians to draw more statisticians involvement in grand survey projects soon to come. Luckily, the first opportunity will be given soon at the Special Session: Meaning from Surveys and Population Studies: BYOQ during the 213 AAS meeting, at Long Beach, California on Jan. 5th, 2009.

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[Book] pattern recognition and machine learning http://hea-www.harvard.edu/AstroStat/slog/2008/pml/ http://hea-www.harvard.edu/AstroStat/slog/2008/pml/#comments Tue, 16 Sep 2008 19:20:43 +0000 hlee http://hea-www.harvard.edu/AstroStat/slog/?p=355 A nice book by Christopher Bishop.
While I was reading abstracts and papers from astro-ph, I saw many applications of algorithms from pattern recognition and machine learning (PRML). The frequency will increase as large scale survey projects numerate, where recommending a good textbook or a reference in the field seems timely.

Survey and population studies generally invite large data sets. Any discussion about individual objects from that survey is an indication that those objects are outliers with respect to the objects in the catalog, created from survey and population studies. These outliers are the objects deserving strong spotlights, in contrast to the notion that outliers are useless. Other than studies about outliers, survey and population studies generally involve machine learning and pattern recognition, or supervised learning and unsupervised learning, or classification and clustering, or statistical learning. Whatever jargon you choose to use, the book overviews most popular machine learning methods extensively with examples, nice illustrations, and concise math. Upon understanding characteristics of the catalog such as dimensions, sample size, independent variable, dependent variable, missing values, sampling (volume limited, magnitude limited, incompleteness), measurement errors, scatter plots, and so on, as a second step to summarize the large data as a whole, the book could offer proper approaches based on your data analysis objective in a statistical sense – in terms of summarizing data.

Click here to access the book website for various resources including a few book chapters, retailer links, examples, and solutions. One of reviews you can check.

A lesson from reading arxiv/astro-ph during the past year is that astronomers must become interdisciplinary particularly those in surveys and creating catalogs. From the information retrieval viewpoint, some rudimentary education about pattern recognition and machine learning is a must as I personally think basic statistics and probability theory should be offered to young astronomers (like astrostatistics summer school at Penn State). While attending graduate school, I saw non stat majors taking statistics classes, except students from astronomy or physics. To confirm this hypothesis, I took computational physics to learn how astronomers and physicists handle data with uncertainty. Although it was one of my favorite classes, the course was quite off from statistics. (Game theory was the most statistically relevant subject.) Hence, I think not many astronomy departments offer practical statistics courses or machine learning and therefore, recommending good and modern textbooks related to (statistical) data analysis can be beneficial to self teaching astronomers. I hope my reasoning is in the right track.

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